PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G01020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 241aa    MW: 25753.1 Da    PI: 4.8324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G01020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-1275122454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRdr+N++f eL +++ ++   +  Kl+Ka+iL  A + + +L
  LPERR02G01020.1  75 SKACREKIRRDRLNDRFLELSSVINPD---KEAKLDKASILSDAARLLAEL 122
                      6789***********************...**************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1364138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.53271122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-974127No hitNo description
PfamPF000103.0E-975122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1276144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-877128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDGGGDPVDE FLIGGGGGGG GGEDGDFGIF CDGVPTMAGD GGLGIDDVSG DACCLDQSIL  60
GKRGRDESSS AGPKSKACRE KIRRDRLNDR FLELSSVINP DKEAKLDKAS ILSDAARLLA  120
ELRGEAEKLK ESNEKLRETI KDLKAEKNEL RDEKVGLKAE KERLEQQVKA LSVAPTGFVP  180
HLPHPAAFHP AAFPPFIPPY QAPGNKNAPT PTAFPGMAMW QWLPPTVVDT TQDPKLWPPN  240
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608810.0AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence.
GenBankAK1034340.0AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence.
GenBankAK1041880.0AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence.
GenBankEU8372630.0EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626366.11e-140PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-58ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D9VBC21e-175A0A0D9VBC2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA007247-PA1e-140(Oryza sativa Indica Group)
STRINGLOC_Os02g02480.11e-140(Oryza sativa Japonica Group)
STRINGORGLA02G0011200.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-42bHLH family protein